Author

J. Charlesworth

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Ecology· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Approach:deep learning· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1

Frequent Co-Authors

J. J. Welch· 2 shared L. A. Weinert· 2 shared A. Bhalla· 1 shared A. J. Carr· 1 shared A. Lee· 1 shared A. W. Tucker· 1 shared C. C. Machado· 1 shared C. D. Buckley· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersEvolutionary Biology

J. J. Welch

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Primed to resolve: A single cell atlas of the shoulder capsule reveals a cellular basis for resolving inflammatory fibrosis

M. T. Ng, R. Borst, H. Gacaferi, S. Davidson, C. C. Machado, I. Reekie, M. Attar, D. Windell, M. Kurowska-Stolarska, L. MacDonald, S. Alivernini, M. Garvilles, K. Jansen, A. Bhalla, A. Lee, , S. G. Dakin

This study identifies MERTK+ macrophages and fibroblasts involved in resolving fibrosis in frozen shoulder using single-cell analysis and suggests therapeutic strategies to enhance their interaction.

bioRxiv · Jan 16, 2023 · PreprintCell Biology

EnteroBase: Hierarchical clustering of 100,000s of bacterial genomes into species/sub-species and populations

M. Achtman, Z. Zhou, J. Charlesworth, L. A. Baxter

EnteroBase uses HierCC to cluster bacterial genomes into species/subspecies and populations, outperforming traditional methods for several genera.

bioRxiv · Jan 11, 2022Microbiology

Genome reduction is associated with bacterial pathogenicity across different scales of temporal and ecological divergence

G. G. R. Murray, J. Charlesworth, E. L. Miller, M. J. Casey, C. T. Lloyd, M. Gottschalk, A. W. Tucker, J. J. Welch, L. A. Weinert

The paper investigates whether genome reduction is linked to bacterial pathogenicity across different scales of divergence and finds it consistently associated with reduced genome size in pathogens.

bioRxiv · Jul 3, 2020Evolutionary Biology

Wolbachia, Cardinium and climate: an analysis of global data

J. Charlesworth, L. A. Weinert, E. V. Araujo-Jnr., J. J. Welch

The paper analyzes global data on Wolbachia and Cardinium infections in arthropods to assess the impact of temperature on their prevalence across different climates.

bioRxiv · Dec 8, 2018Ecology