Author

J. D. Neufeld

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 7 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 8 Approach:experimental assay· 6 Research Focus:cell type annotation· 4 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:ecology & biodiversity· 1 Research Focus:host-pathogen & immune response· 1 Organism:multiple species· 1

Frequent Co-Authors

J. M. Tsuji· 4 shared J. J. Venkiteswaran· 2 shared K. Engel· 2 shared M. Tank· 2 shared S. Hanada· 2 shared S. L. Schiff· 2 shared A. C. Doxey· 1 shared C. Greening· 1 shared

Activity by Year

2016-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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4 shared papersMicrobiology

J. M. Tsuji

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Author profile →

8 papers

Recent·Most cited

Anoxygenic phototrophic Chloroflexota member uses a Type I reaction center

J. M. Tsuji, N. A. Shaw, S. Nagashima, J. J. Venkiteswaran, S. L. Schiff, T. Watanabe, M. Fukui, S. Hanada, M. Tank, J. D. Neufeld

The paper cultivates a novel anoxygenic phototrophic bacterium from the Chloroflexota phylum that uses a Type I reaction center, revealing evolutionary insights into phototrophy.

Nature · Mar 28, 2024Peer-reviewedMicrobiology

Characterization of skin- and intestine microbial communities in migrating high Arctic lake whitefish and cisco

E. F. Hamilton, C. L. Juurakko, K. Engel, P. J. Van Coeverden de Groot, J. M. Casselman, C. W. Greer, J. D. Neufeld, V. K. Walker

This study characterizes the skin- and intestine microbial communities of migrating high Arctic lake whitefish and cisco across different salinity environments, revealing differences in microbiota diversity and potential implications for fish health and fisheries management.

bioRxiv · Mar 8, 2023Microbiology

Microbial community analysis of biofilters reveals a dominance of either comammox Nitrospira or archaea as ammonia oxidizers in freshwater aquaria

M. M. McKnight, J. D. Neufeld

The paper analyzes microbial communities in aquarium biofilters and finds that comammox Nitrospira dominate ammonia oxidation in freshwater systems, while AOA or AOB dominate in saltwater systems.

bioRxiv · Nov 24, 2021 · PreprintMicrobiology

Fifteen shades of clay: distinct microbial community profiles obtained from bentonite samples by cultivation and direct nucleic acid extraction

M. A. Vachon, K. Engel, R. C. Beaver, G. W. Slater, J. Binns, J. D. Neufeld

This study compares microbial communities in bentonite clays using cultivation and direct nucleic acid extraction, finding distinct profiles with limited shared taxa.

bioRxiv · Jul 13, 2021Microbiology

Freshwater Chlorobia exhibit metabolic specialization among cosmopolitan and endemic populations

S. L. Garcia, M. Mehrshad, M. Buck, J. M. Tsuji, J. D. Neufeld, K. McMahon, S. Bertilsson, C. Greening, S. Peura

The paper analyzes global metagenomes to study metabolic specialization of freshwater Chlorobia, revealing widespread distribution and niche-specific adaptations.

bioRxiv · Sep 10, 2020Ecology

Genomic potential for photoferrotrophy in a seasonally anoxic Boreal Shield lake

J. M. Tsuji, N. Tran, S. L. Schiff, J. J. Venkiteswaran, L. A. Molot, M. Tank, S. Hanada, J. D. Neufeld

This study identifies photoferrotrophic potential in Boreal Shield lakes using genome-resolved metagenomics and enrichment cultivation, revealing ecological and biogeochemical controls on this process.

bioRxiv · Feb 19, 2020Microbiology

High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant

E. Spasov, J. M. Tsuji, L. A. Hug, A. C. Doxey, L. A. Sauder, W. J. Parker, J. D. Neufeld

This study identifies high functional diversity among Nitrospira populations in wastewater treatment plant biofilms, revealing distinct metabolic capabilities and spatial distributions.

bioRxiv · Jan 20, 2020Microbiology

Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry

S. Schiff, J. Tsuji, L. Wu, J. Venkiteswaran, L. Molot, R. Elgood, M. Paterson, J. D. Neufeld

The paper uses Boreal Shield lakes to study Archaean ocean biogeochemistry by analyzing isotopic and nucleic acid data from anoxic zones.

bioRxiv · May 20, 2016Microbiology