Author

J. Funke

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Cell Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:Bayesian inference· 1 Approach:deep learning· 1 Organism:Drosophila· 1 Assay:electronic health records· 1 Assay:fluorescence / live-cell microscopy· 1 Approach:statistical model· 1

Frequent Co-Authors

A. E. Rajagopalan· 1 shared A. Hillsley· 1 shared A. Petruncio· 1 shared A. Weigel· 1 shared C. Project Team· 1 shared C. S. Xu· 1 shared D. Ackerman· 1 shared D. Bennett· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperNeuroscience

A. E. Rajagopalan

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3 papers

Recent·Most cited

A Bayesian Solution to Count the Number of Molecules within a Diffraction Limited Spot

A. Hillsley, J. Stein, P. W. Tillberg, D. L. Stern, J. Funke

This paper introduces a Bayesian method to estimate the number of fluorescent emitters in diffraction-limited spots, showing improved accuracy over existing methods.

bioRxiv · Apr 18, 2024 · PreprintBiophysics

Model Based Inference of Synaptic Plasticity Rules

Y. Mehta, D. Tyulmankov, A. E. Rajagopalan, G. C. Turner, J. E. Fitzgerald, J. Funke

This paper introduces a computational method to infer synaptic plasticity rules from neural and behavioral data, revealing an active forgetting component in reward learning in Drosophila.

bioRxiv · Dec 11, 2023 · PreprintNeuroscience

Automatic whole cell organelle segmentation in volumetric electron microscopy

L. Heinrich, D. Bennett, D. Ackerman, W. Park, J. Bogovic, N. Eckstein, A. Petruncio, J. Clements, C. S. Xu, J. Funke, W. Korff, H. Hess, J. Lippincott-Schwartz, S. Saalfeld, A. Weigel, C. Project Team

The paper develops an automatic pipeline for segmenting and analyzing organelles in whole cells using FIB-SEM data, enabling quantification of spatial interactions and cross-modality registration.

bioRxiv · Nov 14, 2020 · PreprintCell Biology