Author

J. Haendiges

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

E. Brown· 1 shared E. Reed· 1 shared G. Davidson· 1 shared J. D. Miller· 1 shared J. Pettengill· 1 shared J. Zheng· 1 shared K. Jinneman· 1 shared M. Hoffmann· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

E. Brown

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Genomic Evidence of Environmental and Resident Salmonella Senftenberg and Montevideo Contamination in the Pistachio Supply-chain

J. Haendiges, G. Davidson, J. Pettengill, E. Reed, T. Blessington, J. D. Miller, N. Anderson, S. Myoda, E. Brown, J. Zheng, R. V. Tikekar, M. Hoffmann

This study analyzes Salmonella contamination in pistachios using genomic data to identify persistent strains and their adaptation mechanisms.

bioRxiv · Mar 18, 2021Microbiology

Choice of library preparation and its effects on sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin producing Escherichia coli

J. Haendiges, K. Jinneman, N. Gonzalez-Escalona

This study compares Nextera XT and Nextera DNA Prep library prep kits for sequencing STEC strains, finding that Nextera DNA Prep provides better sequence quality, genome assembly, and virulence gene detection.

bioRxiv · Nov 2, 2020Microbiology