Author

J. Hyde

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Research Focus:ecology & biodiversity· 3 Research Focus:gene regulatory network inference· 3 Assay:metagenomics· 2 Organism:multiple species· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

B. Steven· 2 shared D. E. Brackney· 2 shared A. Aguilar· 1 shared B. Wager· 1 shared C. Gorham· 1 shared C. Swanson· 1 shared D. Medina-Perez· 1 shared D. Olivares-Zambrano· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

B. Steven

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

A lack of open data standards for large infrastructure project hampers social-ecological research in the Brazilian Amazon

J. Hyde, C. Swanson, S. A. Bohlman, S. Athayde, E. M. Bruna, D. R. Valle

The paper identifies gaps in infrastructure data availability and quality in the Brazilian Amazon, highlighting the need for standardized, accessible, and comprehensive data to improve research and decision-making.

PeerJ · Sep 9, 2025Peer-reviewedEcology

{-}{-}{-}{-}{-}{-}{-}{-}RNA structures within Venezuelan equine encephalitis virus E1 alter macrophage replication fitness and contribute to viral emergence

S. E. Hickson, J. Hyde

This study identifies RNA structures in the E1 gene of epizootic VEEV that alter macrophage replication fitness, suggesting RNA secondary structures contribute to viral emergence.

bioRxiv · Apr 9, 2024Microbiology

Three Species of Axenic Mosquito Larvae Recruit a Shared Core of Bacteria in a Common Garden Experiment

J. Hyde, D. E. Brackney, B. Steven

This study generates three axenic mosquito species and shows they share a core microbiome but have unique structures, with co-rearing leading to microbiome convergence.

bioRxiv · Mar 23, 2023Microbiology

Speciation genomics and the role of depth in the divergence of rockfishes (Sebastes) revealed through Pool-seq analysis of enriched sequences

D. Olivares-Zambrano, J. Daane, J. Hyde, M. W. Sandel, A. Aguilar

The paper uses Pool-seq analysis of rockfish exomes to study speciation, finding depth-related divergence and genes linked to neurosensory function in early speciation.

bioRxiv · Jun 6, 2022Evolutionary Biology

The Intergenic Small Non-Coding RNA ittA is Required for Optimal Infectivity and Tissue Tropism in Borrelia burgdorferi

D. Medina-Perez, B. Wager, E. Troy, L. Gao, S. Norris, T. Lin, L. Hu, J. Hyde, M. Lybecker, J. T. Skare

This paper identifies and characterizes ittA, an intergenic sRNA in Borrelia burgdorferi, showing its role in infectivity and tissue tropism through genetic inactivation and transcriptomic/proteomic analyses.

PLOS Pathogens · May 4, 2020Peer-reviewedMicrobiology

Antibiotic resistant bacteria and commensal fungi are common and conserved in the mosquito microbiome

J. Hyde, C. Gorham, D. E. Brackney, B. Steven

This study identifies antibiotic-resistant bacteria and fungi in mosquito microbiomes, showing their prevalence and conservation across species.

bioRxiv · Jun 13, 2019Microbiology