Author

J. M. J. Swanson

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Biology Disciplines

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Biophysics· 2

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Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Approach:mechanistic / dynamical model· 1 Assay:multiome· 1

Frequent Co-Authors

F. Aydin· 1 shared G. C. A. da Hora· 1 shared M. Oh· 1 shared R. Sun· 1 shared

Activity by Year

2018-2023 · peak 1/yr

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4 top collaborators · 2 mutual co-author links

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1 shared paperBiophysics

F. Aydin

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2 papers

Recent·Most cited

tICA-Metadynamics for Identifying Slow Dynamics in Membrane Permeation

M. Oh, G. C. A. da Hora, J. M. J. Swanson

This paper applies tICA-metadynamics to identify slow dynamics in trimethoprim permeation through a multicomponent membrane, improving convergence efficiency and correcting artifacts in collective variables.

bioRxiv · Aug 16, 2023Biophysics

Mechanism of Mycolactone Toxin Membrane Permeation: Atomistic vs Coarse-Grained MARTINI Simulations

F. Aydin, R. Sun, J. M. J. Swanson

This study compares atomistic and coarse-grained simulations of mycolactone isomers interacting with DPPC membranes to understand their permeation mechanisms.

bioRxiv · Nov 14, 2018Biophysics