Author

J. M. Nicoludis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 3 Organism:bacteria (other)· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:mechanistic / dynamical model· 1 Assay:protein sequence· 1 Approach:statistical model· 1 Assay:structural biology· 1

Frequent Co-Authors

R. Gaudet· 2 shared A. Green· 1 shared A. T. Bozzi· 1 shared B. K. Lee· 1 shared C. H. Zhang· 1 shared C. M. Zimanyi· 1 shared D. Marks· 1 shared E. May· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBiophysics

R. Gaudet

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3 papers

Recent·Most cited

BiophysicsbioRxivMar 28, 2022

Transient Water Wires Mediate Selective Proton Conduction in Designed Channel Proteins

H. T. Kratochvil, L. C. Watkins, M. Mravic…·W. DeGrado

The paper designs proton-conducting channels that use transient water wires to achieve high selectivity for protons over sodium ions.

DOI 10.1038/s41557-023-01210-4

mechanistic / dynamical modelprotein folding & dynamics

𝕏 PostBluesky

BiophysicsbioRxivDec 11, 2018

Interaction specificity of clustered protocadherins inferred from sequence covariation and structural analysis

J. M. Nicoludis, A. Green, S. Walujkar…·R. Gaudet

The paper uses sequence coevolution and structural analysis to model interaction specificity of clustered protocadherins and predict isoform-specific interactions.

DOI 10.1073/pnas.1821063116

protein sequencestatistical model

𝕏 PostBluesky

BiochemistrybioRxivAug 29, 2018

Structures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter

A. T. Bozzi, C. M. Zimanyi, J. M. Nicoludis…·R. Gaudet

The paper presents high-resolution structures of DraNramp at different stages of its transport cycle to elucidate metal and proton pathways and conformational changes in the Nramp transporter.

DOI 10.7554/elife.41124

bacteria (other)structural biology

𝕏 PostBluesky