Author

J. Porter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Bioengineering· 1 Biophysics· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 3 Assay:DNA methylation· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

J. Y. Lee· 2 shared T. P. Stinear· 2 shared A. Buultjens· 1 shared A. Greenhalgh· 1 shared A. Luttick· 1 shared A. Velink· 1 shared A. W. Schill· 1 shared A. Wan· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersMicrobiology

J. Y. Lee

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

A low-cost and versatile paramagnetic bead DNA extraction method for Mycobacterium ulcerans environmental surveillance.

J. Y. Lee, J. Porter, E. C. Hobbs, P. Whiteley, A. Buultjens, T. P. Stinear

The paper develops a low-cost DNA extraction method using paramagnetic beads for environmental surveillance of Mycobacterium ulcerans in possum excreta and tissue swabs, showing cost savings and comparable DNA quality to commercial kits.

bioRxiv · May 31, 2024 · PreprintMicrobiology

Mussels on the move: new records of the invasive non-native quagga mussel (Dreissena rostriformis bugensis) in Great Britain using eDNA and a new probe-based qPCR assay

S. Peixoto, R. Blackman, J. Porter, A. Wan, C. Gerrard, B. Aston, L. Lawson Handley

This study uses eDNA and a new probe-based qPCR assay to detect quagga mussels in Great Britain, finding they are more widespread than previously thought.

bioRxiv · Dec 18, 2023 · PreprintEcology

Mycobacterium ulcerans not detected by PCR on human skin in Buruli ulcer endemic areas of south eastern Australia

A. Velink, T. Stinear, J. Porter, P. D. R. Johnson

The paper tests if Mycobacterium ulcerans is present on human skin in Buruli ulcer endemic areas using PCR swabs but finds no detection.

bioRxiv · Mar 29, 2023 · PreprintMicrobiology

Longitudinal in vivo changes in radial peripapillary capillaries and optic nerve head structure in non-human primates with early experimental glaucoma

G. Musial, S. Adhikari, H. Mirhajianmoghadam, H. M. Queener, A. W. Schill, N. B. Patel, J. Porter

This study tracks changes in radial peripapillary capillaries and optic nerve head structure in non-human primates with early experimental glaucoma, finding that RPC density often changes before retinal nerve fiber layer thinning.

bioRxiv · Jul 11, 2021Bioengineering

Validation of a Single-step, Single-tube Reverse Transcription-Loop-Mediated Isothermal Amplification Assay for Rapid Detection of SARS-CoV-2 RNA

J. Y. Lee, N. Best, J. L. McAuley, J. Porter, T. Seemann, M. B. Schultz, M. Sait, N. Orlando, K. Mercoulia, S. A. Ballard, J. Druce, T. Tran, M. Catton, M. J. Pryor, H. L. Cui, , T. P. Stinear

The paper validates a single-step, single-tube RT-LAMP assay for rapid SARS-CoV-2 detection with high specificity and sensitivity.

Journal of Medical Microbiology · Sep 1, 2020Peer-reviewedMicrobiology

Enspara: Modeling molecular ensembles with scalable data structures and parallel computing

J. Porter, M. I. Zimmerman, G. R. Bowman

Enspara improves the scalability of Markov state models by introducing novel algorithms and data structures for efficient computation.

bioRxiv · Sep 29, 2018Biophysics