Author

J. Quackenbush

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cancer Biology· 2 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1

Frequent Co-Authors

B. G. Pierce· 1 shared C. Lamberty· 1 shared C. M. Lopes-Ramos· 1 shared D. L. DeMeo· 1 shared E. Saha· 1 shared G. Taherzadeh· 1 shared I. Mittra· 1 shared J. D. Guest· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

B. G. Pierce

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Polygenic basis of Bt Cry resistance evolution in wild Helicoverpa zea

K. L. Taylor, J. Quackenbush, C. Lamberty, K. A. Hamby, M. L. Fritz

The paper identifies polygenic resistance mechanisms to Bt crops in Helicoverpa zea, highlighting gene copy number variation and trypsin gene upregulation as key factors.

bioRxiv · Feb 9, 2024 · PreprintEvolutionary Biology

Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma

E. Saha, M. Ben-Guebila, V. Fanfani, J. Fischer, K. H. Shutta, P. Mandros, D. L. DeMeo, J. Quackenbush, C. M. Lopes-Ramos

The paper identifies sex differences in gene regulatory networks in lung adenocarcinoma and identifies potential sex-biased cancer therapeutics.

bioRxiv · Sep 22, 2023 · PreprintCancer Biology

Structural and energetic profiling of SARS-CoV-2 antibody recognition and the impact of circulating variants

R. Yin, J. D. Guest, G. Taherzadeh, R. Gowthaman, I. Mittra, J. Quackenbush, B. G. Pierce

The paper maps antibody recognition of SARS-CoV-2 spike RBD using computational structural analysis and identifies antibodies effective against viral variants.

bioRxiv · Mar 21, 2021Microbiology

Nongenic cancer-risk SNPs affect oncogenes, tumor suppressor genes, and immune function

M. Fagny, J. Platig, M. L. Kuijjer, X. Lin, J. Quackenbush

The paper maps cancer-risk SNPs to tissue-specific eQTL networks, finding they cluster in functionally related communities and target oncogenes and tumor suppressor genes.

bioRxiv · Dec 27, 2018Cancer Biology