Author

J. Rodriguez-Ramos

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

M. Shaffer· 3 shared R. A. Daly· 3 shared K. C. Wrighton· 2 shared L. M. Solden· 2 shared M. A. Borton· 2 shared A. A. Zayed· 1 shared A. B. Narrowe· 1 shared A. Sabag-Daigle· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersMicrobiology

M. Shaffer

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Human-gut phages harbor sporulation genes

D. Schwartz, J. Rodriguez-Ramos, M. Shaffer, R. Flynn, R. A. Daly, K. Wrighton, J. T. Lennon

The paper identifies sporulation genes in human gut phages that may influence bacterial spore formation and host microbiome health.

bioRxiv · Jan 19, 2023Microbiology

Exposing New Taxonomic Variation with Inflammation-A Murine Model-Specific Genome Database for Gut Microbiome Researchers

I. Leleiwi, J. Rodriguez-Ramos, M. Shaffer, A. Sabag-Daigle, K. Kokkinias, R. M. Flynn, R. A. Daly, L. F. Kop, L. M. Solden, B. M. M. Ahmer, M. A. Borton, K. C. Wrighton

The paper presents a genomic catalog of the CBA/J murine gut microbiome, revealing taxonomic and functional changes during Salmonella-induced inflammation.

bioRxiv · Oct 24, 2022 · PreprintMicrobiology

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M. Shaffer, M. A. Borton, B. B. McGivern, A. A. Zayed, S. L. La Rosa, L. M. Solden, P. Liu, A. B. Narrowe, J. Rodriguez-Ramos, B. Bolduc, M. C. Gazitua, R. A. Daly, G. J. Smith, D. R. Vik, P. B. Pope, , K. C. Wrighton

DRAM automates microbiome function curation by translating genomic data into microbial traits, accurately assigning metabolic roles in soil and gut communities.

Nucleic Acids Research · Aug 7, 2020Peer-reviewedMicrobiology