Author

James Perez

San Francisco State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetic & Genomic Medicine· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Adam Goldstein· 1 shared Allison M. LakeiD· 1 shared Bruno A. BeníteziD· 1 shared Carlos CruchagaiD· 1 shared Chengran YangiD· 1 shared Fabiana Geraldo FariasiD· 1 shared Fengxian WangiD· 1 shared John BuddeiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Adam Goldstein

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2 papers

Recent·Most cited

Sex-aware Cross-tissue Regulatory Transformer Identified Sexually Dimorphic Alzheimer's Disease Risk Loci and Causal Cellular Circuit

Zhiang Cheng, Seno Judaprawira, James Perez, Adam Goldstein

The paper identifies sex-specific Alzheimer's disease risk loci using a sex-conditioned Transformer model and links them to cellular mechanisms and disease phenotypes.

medRxiv · Oct 9, 2026 · PreprintGenetic & Genomic Medicine

The TMEM106B rs1990621 protective variant is also associated with increased neuronal proportion

Zeran Li, Fabiana Geraldo Farias, Umber Dube, Jorge L. Del‐Aguila, Kathie A. Mihindukulasuriya, María Victoria Fernández, Laura Ibáñez, John Budde, Fengxian Wang, Allison M. Lake, Yuetiva K. Deming, James Perez, Chengran Yang, Joseph L. Bradley, Richard Davenport, , Carlos Cruchaga

The paper identifies a genetic variant in TMEM106B associated with increased neuronal proportion in neurodegenerative and cognitive normal cohorts, suggesting a role in neuronal protection.

bioRxiv · Mar 20, 2019 · PreprintNeuroscience