Author

Jason Alexander

Allen Institute for Brain Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Adrian Pinder· 1 shared Alana A. OyamaiD· 1 shared Amanda GaryiD· 1 shared Andrew M. Hosie· 1 shared Andy D. Austin· 1 shared Angela Alaya· 1 shared Augustin RuiziD· 1 shared Brian LongiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperEvolutionary Biology

Adrian Pinder

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2 papers

Recent·Most cited

MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics

Naomi X. Martin, Paul A. Olsen, Jacob Quon, Jazmin Campos, Nasmil Valera Cuevas, Josh Nagra, Marshall VanNess, Zoe Maltzer, Emily C. Gelfand, Alana A. Oyama, Amanda Gary, Yimin Wang, Angela Alaya, Augustin Ruiz, Cade Reynoldson, , Jack Waters

The paper introduces MerQuaCo, an open-source tool to automatically detect and quantify imperfections in spatial transcriptomics data, improving quality assessment.

bioRxiv · Dec 4, 2024 · PreprintBioinformatics

What are the best practices for curating eDNA custom barcode reference libraries? A case study using Australian subterranean fauna.

Michelle T. Guzik, Danielle N. Stringer, Jake Thornhill, Peterson J. Coates, Mieke van der Heyde, Mia J. Hillyer, Nicole E White, Mattia Saccò, Perry Beasley-Hall, William F. Humphreys, Mark S. Harvey, Joel A. Huey, Nerida G. Wilson, Jason Alexander, Garth Humphreys, , Andy D. Austin

The paper presents best practices for curating a custom barcode reference library for subterranean fauna using eDNA metabarcoding, including sequence curation, taxonomy refinement, and workflow standardization.

bioRxiv · Sep 18, 2024 · PreprintEvolutionary Biology