Author

Javad Golji

Novartis (Switzerland)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Joshua M. KorniD· 2 shared Antoine de WeckiD· 1 shared Audrey KauffmanniD· 1 shared E. Robert McDonaldiD· 1 shared Éric BillyiD· 1 shared Hans BitteriD· 1 shared Matthew D. ShirleyiD· 1 shared Michael D. JonesiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Joshua M. KornORCID

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2 papers

Recent·Most cited

PISCES: a package for rapid quantitation and quality control of large scale mRNA-seq datasets

Matthew D. Shirley, Viveksagar Krishnamurthy Radhakrishna, Javad Golji, Joshua M. Korn

PISCES provides a Python package for efficient mRNA-seq data processing, including quantitation, quality control, and differential expression analysis.

bioRxiv · Dec 1, 2020 · PreprintBioinformatics

Correction of copy number induced false positives in CRISPR screens

Antoine de Weck, Javad Golji, Michael D. Jones, Joshua M. Korn, Éric Billy, E. Robert McDonald, Tobias Schmelzle, Hans Bitter, Audrey Kauffmann

The paper introduces two methods to correct false positives in CRISPR screens caused by copy number variations, reducing false positives by 70-80% in amplified regions.

PLoS Computational Biology · Jul 19, 2018Peer-reviewedBioinformatics