Author

Jennifer Hipp

PathAI (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:imaging· 1 Research Focus:spatial domain detection· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Ali Moshrefi· 1 shared Ana Granat· 1 shared Andreas SchereriD· 1 shared Andrew H. BeckiD· 1 shared Aparna Natarajan· 1 shared Arati RaziuddiniD· 1 shared Ashley Walton· 1 shared Baitang NingiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Ali Moshrefi

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Author profile →

2 papers

Recent·Most cited

Quantification of collagen and associated features from H&E-stained whole slide pathology images across cancer types using a physics-based deep learning model

Tan Huu Nguyen, Jun Zhang, Jennifer Hipp, Guillaume Chhor, Michael Griffin, Nhat Le, Deeksha Kartik, Yibo Zhang, Mohammad Mirzadeh, Julia Varao, Jim Allay, Morgan Sweeney, V H Ruelas Rivera, Brea Johnson, Jacqueline A. Brosnan‐Cashman, , Robert Egger

This paper introduces a deep learning model to predict collagen from H&E-stained images, enabling collagen quantification across cancer types and linking it to clinical outcomes.

bioRxiv · Mar 17, 2025 · PreprintPathology

Achieving reproducibility and accuracy in cancer mutation detection with whole-genome and whole-exome sequencing

Wenming Xiao, Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Justin Lack, Meijian Guan, Bin Zhu, Erich B. Jaeger, Liz Kerrigan, Thomas M. Blomquist, Tiffany Hung, Marc Sultan, Kenneth B. Idler, Charles Lu, , Leming M. Shi

This study evaluates reproducibility and accuracy of cancer mutation detection using whole-genome and whole-exome sequencing across multiple sequencing centers and bioinformatics pipelines.

Nature Biotechnology · Sep 1, 2021Peer-reviewedGenomics