Author

Jerry Chen

University of California System

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Jimmy Kuang‐Hsien HuiD· 2 shared Neil Y. C. LiniD· 2 shared Alexandra Bermúdez· 1 shared Alexandra G. BermudeziD· 1 shared Andrew S. GoldsteiniD· 1 shared Cho-Jui Hsieh· 1 shared Dapeng BiiD· 1 shared Johnny Diaz· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCell Biology

Jimmy Kuang‐Hsien HuORCID

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2 papers

Recent·Most cited

Cell jamming transition is regulated by mitochondrial pyruvate transport and endocytosis

Alexandra Bermúdez, Zoe D. Latham, Johnny Diaz, Weihong Yan, Jerry Chen, Dapeng Bi, Andrew S. Goldstein, Jimmy Kuang‐Hsien Hu, Neil Y. C. Lin

The paper shows that mitochondrial pyruvate transport and endocytosis regulate the cell jamming transition in epithelial tissues.

Proceedings of the National Academy of Sciences · Oct 7, 2026Peer-reviewedCell Biology

Synthesizing Mechanistic Hypotheses from Single-Cell Omics via Discretized Feature Attribution and Empirical Language Model Grounding

Jerry Chen, Yunqi Hong, Alexandra G. Bermudez, Jimmy Kuang‐Hsien Hu, Cho-Jui Hsieh, Neil Y. C. Lin

This paper introduces a framework to convert continuous neural network attributions into testable biological hypotheses using decision trees and language models, validated on single-cell omics data.

bioRxiv · Jul 10, 2026 · PreprintSystems Biology