Alexandra G. Bermudez

Synthesizing Mechanistic Hypotheses from Single-Cell Omics via Discretized Feature Attribution and Empirical Language Model Grounding

This paper introduces a framework to convert continuous neural network attributions into testable biological hypotheses using decision trees and language models, validated on single-cell omics data.

Programmable artificial RNA condensates in mammalian cells

This paper introduces programmable artificial RNA condensates in mammalian cells that can be controlled for subcellular localization and molecular recruitment.

Mechanistic Language Modeling and Oxygenated 3D Screening Reveal Berberine and Enzalutamide Synergy in Resistant Prostate Cancer

An Open-Source Membrane Stretcher for Simultaneous Mechanical and Structural Characterizations of Soft Materials and Biological Tissues

This paper introduces an open-source stretching system for simultaneous mechanical and structural analysis of soft materials and biological tissues.