Deep-Plant: a supervised foundation model for plant regulatory genomics
Ahmed Daoud, Soumyadip Roy, Haoxuan Zeng, Xinyu Bao, Zhenhao Zhang, Jiakang Wang, Paul Duclos Parodi, A. Sathyanarayana Reddy, Jie Liu, Asa Ben‐Hur
This paper introduces a supervised foundation model for plant regulatory genomics that predicts chromatin state from genomic sequence, showing improved speed, accuracy, and interpretability over DNA language models.
bioRxiv · Apr 9, 2026 · PreprintGenomics