Author

Soumyadip Roy

Colorado State UniversityORCID 0000-0003-1932-4315Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1

Frequent Co-Authors

Asa Ben‐HuriD· 2 shared A. Sathyanarayana ReddyiD· 1 shared Adiba YaseeniD· 1 shared Ahmed DaoudiD· 1 shared Fayyaz MinhasiD· 1 shared Haoxuan ZengiD· 1 shared Jiakang Wang· 1 shared Jie LiuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Asa Ben‐HurORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintApr 9, 2026

Deep-Plant: a supervised foundation model for plant regulatory genomics

Ahmed Daoud, Soumyadip Roy, Haoxuan Zeng…·Asa Ben‐Hur

This paper introduces a supervised foundation model for plant regulatory genomics that predicts chromatin state from genomic sequence, showing improved speed, accuracy, and interpretability over DNA language models.

DOI 10.64898/2026.04.06.716755

Arabidopsisrat

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BioinformaticsbioRxivPreprintAug 23, 2024

Predicting small-molecule inhibition of protein complexes

Adiba Yaseen, Soumyadip Roy, Naeem Akhter…·Fayyaz Minhas

The paper introduces a graph neural network to predict small-molecule inhibition of protein complexes using compound and protein structure inputs, achieving high accuracy on benchmark datasets.

1 citation

protein structuregraph neural network

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