Author

Paul Duclos Parodi

Colorado State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1

Frequent Co-Authors

A. Sathyanarayana ReddyiD· 1 shared Ahmed DaoudiD· 1 shared Alison M. VeintimillaiD· 1 shared Asa Ben‐HuriD· 1 shared Erika MooreiD· 1 shared Haoxuan ZengiD· 1 shared Jiakang Wang· 1 shared Jie LiuiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

A. Sathyanarayana ReddyORCID

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2 papers

Recent·Most cited

Ancestry-Linked IL-10 Signaling and Macrophage Activation Modulate Fibroblast Responses to Oxidative Stress in a PEG-Based Microphysiological System

Nana Owusu‐Boaitey, Alison M. Veintimilla, Miriam Tamaño-Blanco, Paul Duclos Parodi, Katriel Barcellano, Sanjana Ranasinghe, Erika Moore

npj Biomedical Innovations. · Jul 1, 2026Peer-reviewedBioengineering

Deep-Plant: a supervised foundation model for plant regulatory genomics

Ahmed Daoud, Soumyadip Roy, Haoxuan Zeng, Xinyu Bao, Zhenhao Zhang, Jiakang Wang, Paul Duclos Parodi, A. Sathyanarayana Reddy, Jie Liu, Asa Ben‐Hur

This paper introduces a supervised foundation model for plant regulatory genomics that predicts chromatin state from genomic sequence, showing improved speed, accuracy, and interpretability over DNA language models.

bioRxiv · Apr 9, 2026 · PreprintGenomics