Author

Jinqi Yuan

Soochow University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Junpeng ZhouiD· 2 shared Xiaoqian HuangiD· 2 shared Yumei LiiD· 2 shared Jialuo Ye· 1 shared Jingyi Jessica LiiD· 1 shared Keyao Zhu· 1 shared Shen YangiD· 1 shared Susu QuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Junpeng ZhouORCID

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Author profile →

3 papers

Recent·Most cited

Pan-cancer nucleosome landscapes reveal tumor heterogeneity and inform cell-free DNA-based detection

Shen Yang, Jialuo Ye, Jinqi Yuan, Xiaoqian Huang, Yue Yin, zhaoying Liu, Wei Li, Yumei Li

The paper characterizes nucleosome organization across 23 cancer types using ATAC-seq and shows its utility for cancer classification and detection using cell-free DNA.

bioRxiv · Oct 18, 2026 · PreprintBioinformatics

cfDNAanalyzer: a comprehensive toolkit for analyzing cell-free DNA genomic sequencing data in liquid biopsy

Junpeng Zhou, Keyao Zhu, Xiaoqian Huang, Jinqi Yuan, Yumei Li

cfDNAanalyzer provides a toolkit for analyzing cfDNA data to enable disease detection through machine learning models.

bioRxiv · Jun 9, 2025 · PreprintBioinformatics

Systematic Evaluation of Cell Type Deconvolution Methods for Plasma Cell-free DNA

Tongyue Sun, Jinqi Yuan, Yacheng Zhu, Yang Shen, Junpeng Zhou, Xinzhou Ge, Susu Qu, Wei Li, Jingyi Jessica Li, Yumei Li

This study benchmarks five methylation-based methods for cell type deconvolution of plasma cell-free DNA using deep whole-genome bisulfite sequencing data from 35 human cell types.

bioRxiv · Mar 25, 2024 · PreprintBioinformatics