Author

Jonathan Chen

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metabolomics· 1

Frequent Co-Authors

Ahmad Rahman· 1 shared Ailis C. Dooner· 1 shared Alan Liu· 1 shared Alex XieiD· 1 shared Alexander Wei· 1 shared Alexandros MakriyannisiD· 1 shared Alexi Monovoukas· 1 shared Alyssa Kuwana· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenetics

Ahmad Rahman

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3 papers

Recent·Most cited

Pseudouridines in the U2 Branch Site Recognition Region Differentially Contribute to Branch Site Recognition during Pre-mRNA Splicing

Rui Zhang, Meemanage D. De Zoysa, Jonathan Chen, Hironori Adachi, Yu Huining Sun, Yi‐Tao Yu

This study shows that specific pseudouridines in the U2 branch site recognition region affect branch site recognition during pre-mRNA splicing in yeast.

bioRxiv · Aug 10, 2026 · PreprintMolecular Biology

Stool Metabolomics Reveals Catecholamine and Tryptophan-NAD+ Pathway Alterations in Autism Spectrum Disorder

Kevin Liu, Huixi Li, Shaohan Zhang, Muya Xi, Junru Zhu, Jonathan Chen, William Xu, Alex Xie, Alexandros Makriyannis, Jason Jianxin Guo, Xuejun Kong

This study identifies gut-derived metabolite alterations in ASD, showing distinct metabolic networks and a moderate ability to distinguish ASD from controls using a small panel of metabolites.

bioRxiv · Feb 25, 2026 · PreprintMicrobiology

An Interscholastic Network to Generate LexA Enhancer Trap Lines in Drosophila

Lutz Kockel, Catherine Griffin, Yaseen Adnan Ahmed, Lauren Fidelak, Arjun Rajan, Ethan P. Gould, Myles Haigney, Benjamin Ralston, Rex J. Tercek, Lara Galligani, Sagar Rao, Lutfi Huq, Hersh K. Bhargava, Ailis C. Dooner, Emily G. Lemmerman, , Seung K. Kim

The paper describes the generation and characterization of novel LexA enhancer trap lines in Drosophila through a collaborative interscholastic network.

G3 Genes Genomes Genetics · Apr 30, 2019Peer-reviewedGenetics