Author

Jose Pomarino Nima

Columbia University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Adeya Wyatt· 1 shared Bianca DumitrascuiD· 1 shared Charlotte BellamyiD· 1 shared Dreyton AmadoriD· 1 shared Elham AziziiD· 1 shared Henry Fuchs· 1 shared Jonathan Chin CheongiD· 1 shared José L. McFaline‐FigueroaiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Adeya Wyatt

Mutual co-authors in cluster

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 23, 2024

Patches: A Representation Learning framework for Decoding Shared and Condition-Specific Transcriptional Programs in Wound Healing

Ozgur Beker, Simon Van Deursen, Michel Tarnow…·Bianca Dumitrascu

Patches decodes shared and condition-specific transcriptional programs in wound healing using scRNA-seq data, revealing universal patterns and treatment-specific changes.

1 citation

humanscRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 8, 2024

A heterogeneous pharmaco-transcriptomic landscape induced by targeting a single oncogenic kinase

Ross M. Giglio, Nicholas Y. Hou, Lingting Shi…·Jose Ricardo McFaline-Figueroa

This study uses SCHEMATIC to analyze the molecular response of glioblastoma to EGFR inhibitors, identifying chemotype-specific programs and showing that combined EGFR/PI3K inhibition reduces adaptive transcription.

7 citations

humanbulk RNA-seq

𝕏 PostBluesky