Author

K. Faizi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

C. Goulding· 1 shared C. V. Duffy· 1 shared E. Gibson· 1 shared E. Kinnaman· 1 shared E. Wang· 1 shared G. F. Matias· 1 shared H. Kitano· 1 shared H. Slabodkin· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

C. Goulding

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2 papers

Recent·Most cited

Root Walker: an automated pipeline for large scale quantification of early root growth responses at high spatial and temporal resolution

M. P. Platre, P. Mehta, Z. Halvorson, L. zhang, G. F. Matias, L. Brent, K. Faizi, C. Goulding, W. Busch

Root Walker quantifies root growth responses to environmental signals using automated imaging and analysis, revealing auxin concentration dependence and MAPK inhibitor specificity.

bioRxiv · Nov 16, 2022Plant Biology

Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting

J. Wei, P. Lotfy, K. Faizi, S. Baungaard, E. Gibson, E. Wang, H. Slabodkin, E. Kinnaman, S. Chandrasekaran, H. Kitano, M. G. Durrant, C. V. Duffy, P. D. Hsu, S. Konermann

The paper develops a deep learning model to predict CRISPR-Cas13d guide RNA efficiency and identifies novel orthologs with improved specificity and reduced toxicity for RNA targeting.

bioRxiv · Sep 14, 2021Bioengineering