Author

K. S. Bonham

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Organism:human· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2

Frequent Co-Authors

V. Klepac-Ceraj· 4 shared RESONANCE Consortium· 3 shared S. Rowland· 2 shared A. A. Schoenborn· 1 shared A. Fishbein· 1 shared A. Leon-Reyes· 1 shared B. E. Wolfe· 1 shared C. Huttenhower· 1 shared

Activity by Year

2016-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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4 shared papersMicrobiology

V. Klepac-Ceraj

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children

K. S. Bonham, G. F. Bottino, S. H. McCann, J. Beauchemin, E. Weisse, F. Barry, R. Cano-Lorente, RESONANCE Consortium, C. Huttenhower, M. M. K. Bruchhage, V. D'Sa, S. Deoni, V. Klepac-Ceraj

This study links gut microbiota composition and gene functions to cognitive function and brain structure in children using machine learning models.

Science Advances · Dec 22, 2023Peer-reviewedMicrobiology

Microclimate is a strong predictor of the native and invasive plant-associated soil microbiota on San Cristobal Island, Galapagos archipelago

A. A. Schoenborn, S. M. Yannarell, C. T. MacVicar, N. N. B. Medina, L. M. Markellie, H. Mitchell, K. S. Bonham, A. Leon-Reyes, V. Klepac-Ceraj, E. A. Shank

The paper investigates how microclimate influences soil microbial communities on San Cristobal Island, finding it is the strongest driver of bacterial and fungal diversity.

bioRxiv · Apr 5, 2022Microbiology

Targeted high-resolution taxonomic identification of Bifidobacterium longum subsp. infantis using human milk oligosaccharide metabolizing genes

L. Tso, K. S. Bonham, A. Fishbein, S. Rowland, RESONANCE consortium, V. Klepac-Ceraj

The paper identifies B. infantis using HMO-metabolizing genes and finds it is rare in US infants.

bioRxiv · Jun 4, 2021Microbiology

Comparative analysis of 16S rRNA gene and metagenome sequencing in pediatric gut microbiomes

D. Peterson, K. S. Bonham, S. Rowland, C. W. Pattanayak, RESONANCE Consortium, V. Klepac-Ceraj

The paper compares 16S rRNA gene and shotgun metagenomic sequencing in pediatric gut microbiomes to assess their effectiveness in capturing microbial diversity and composition across age groups.

bioRxiv · Feb 20, 2021 · PreprintMicrobiology

Extensive Horizontal Gene Transfer in Cheese-Associated Bacteria

K. S. Bonham, B. E. Wolfe, R. J. Dutton

The paper identifies extensive horizontal gene transfer in cheese rind microbiomes, finding 4,844 protein-coding genes in 200 putative transferred regions, many involved in siderophore acquisition.

bioRxiv · May 23, 2017Microbiology

Gender disparity in computational biology research publications

K. S. Bonham, M. I. Stefan

This study examines gender representation in computational biology publications, finding fewer female authors compared to general biology but more than computer science.

bioRxiv · Sep 9, 2016Scientific Communication & Education