Nathalie Charbonnel

Intensive pine plantation management shapes infectious agent communities in the generalist rodent Apodemus sylvaticus, with consequences for zoonotic hazard

The paper examines how pine plantations affect infectious agent communities in wood mice, finding habitat-specific impacts on infection probability and host abundance with implications for zoonotic risk.

Detection and characterisation of alpha- and betacoronaviruses in rodents and bats from Germany, France, Belgium and Ireland

This study detects and characterizes coronaviruses in rodents and bats from four European countries, identifying new viral lineages and highlighting potential zoonotic risks.

Drivers of host-pathogen community assemblies in European forests and urban green spaces

The paper investigates how biodiversity and habitat changes affect pathogen communities in European forests and urban areas, finding that host diversity increases pathogen richness but urbanization reduces certain pathogens.

Broadleaved hedgerows as complementary habitats for small mammals in pine plantation landscapes

The paper assesses small mammal communities in pine plantations and hedgerows, finding hedgerows benefit some species but not restore forest specialists.

Host competence-abundance relationships drive the dilution effect across multiple small mammal-borne pathogens

The paper examines the dilution effect of host diversity on small mammal-borne pathogens, finding pathogen-specific patterns influenced by host competence and abundance.

Surveillance of zoonotic pathogens in small mammals across a gradient of forest anthropization in Eastern France

The paper surveys zoonotic pathogens in small mammals across a forest anthropization gradient, finding pathogen richness and community structure vary with host species, site, and urban adaptation traits.

Urban bats change the menu: dietary plasticity across human-modified landscapes of a tropical island

This study examines dietary changes in urban insectivorous bats on a tropical island, finding shifts in prey preferences linked to land use and reproductive strategies.

In silico and empirical evaluation of twelve COI & 16S metabarcoding primer sets for insectivorous diet analyses

This study evaluates twelve COI and 16S metabarcoding primer sets for insectivorous diet analysis using in silico and empirical methods, finding primer degeneracy and amplicon length are key factors affecting detection and reliability.

Population genomics of bank vole populations reveals associations between immune related genes and the epidemiology of Puumala hantavirus in Sweden

The paper investigates genetic associations between immune-related genes and Puumala hantavirus epidemiology in bank voles across Sweden.

Biological invasions in rodent communities: from ecological interactions to zoonotic bacterial infection issues

The paper investigates how zoonotic bacterial communities in invasive rodents affect invasion success and disease dynamics in Senegal.

Parasites and invasions: changes in gastrointestinal helminth assemblages in invasive and native rodents in Senegal.

The paper investigates changes in gastrointestinal helminth assemblages in invasive and native rodents in Senegal, finding support for the enemy release hypothesis but no strong evidence of parasite spillover or spillback.

Microevolution of Bank Voles (Myodes glareolus) at Neutral and Immune Related Genes During Multiannual Dynamic Cycles: Consequences for Puumala hantavirus Epidemiology

The paper examines microevolutionary changes in bank voles during population cycles and their impact on Puumala hantavirus epidemiology, finding that neutral processes dominate over selection.

16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection

This paper describes a data cleaning procedure for 16S rRNA amplicon sequencing to accurately estimate bacterial positivity, prevalence, and coinfection in wildlife, using rodent samples from Senegal.