Author

Katarzyna Mackinnon

University of Dundee

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Geoffrey J. BartoniD· 3 shared Gordon Grant SimpsoniD· 3 shared Nicholas J. SchurchiD· 3 shared Céline DuciD· 2 shared Kimon FroussiosiD· 2 shared Anna V. SherwoodiD· 1 shared Anthony J W HalliD· 1 shared Katarzyna KnopiD· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersMolecular Biology

Geoffrey J. BartonORCID

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Author profile →

3 papers

Recent·Most cited

Nanopore direct RNA sequencing maps an Arabidopsis N6 methyladenosine epitranscriptome

Matthew T Parker, Katarzyna Knop, Anna V. Sherwood, Nick Schurch, Katarzyna Mackinnon, Peter D. Gould, Anthony J W Hall, Geoffrey J. Barton, Gordon Grant Simpson

This study uses nanopore direct RNA sequencing to map the m6A epitranscriptome in Arabidopsis, revealing its role in mRNA processing and circadian rhythms.

bioRxiv · Jul 17, 2019 · PreprintMolecular Biology

How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome?

Kimon Froussios, Nick Schurch, Katarzyna Mackinnon, Marek Gierliński, Céline Duc, Gordon Grant Simpson, Geoffrey J. Barton

This study evaluates DGE tools' performance in Arabidopsis thaliana, finding that their false positive rates are not strongly affected by transcriptome complexity.

Bioinformatics · Feb 5, 2019Peer-reviewedGenomics

Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

Kira Mourão, Nicholas J. Schurch, Radoslaw Lucoszek, Kimon Froussios, Katarzyna MacKinnon, Céline Duc, Gordon Grant Simpson, Geoffrey J. Barton

RoSA detects and corrects spurious antisense RNA-seq reads in strand-specific datasets, improving accuracy in antisense transcription analysis.

bioRxiv · Sep 26, 2018 · PreprintBioinformatics