Kimon Froussios

This study evaluates DGE tools' performance in Arabidopsis thaliana, finding that their false positive rates are not strongly affected by transcriptome complexity.

RoSA detects and corrects spurious antisense RNA-seq reads in strand-specific datasets, improving accuracy in antisense transcription analysis.

RATs identifies differential transcript usage from transcript abundance estimates, finds novel events, and highlights annotation dependency issues in RNA-seq data.