Author

Konstantinos Tsolakidis

University of Copenhagen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Research Focus:drug response / drug discovery· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Artù BreueriD· 2 shared Athanasios OikonomouiD· 2 shared Nikos S. HatzakisiD· 2 shared Steen W.B. BenderiD· 2 shared Emily Winther SørenseniD· 1 shared Frank SchulziD· 1 shared Georgios BolisiD· 1 shared Georgios KyriakakisiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBiophysics

Artù BreuerORCID

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Author profile →

2 papers

Recent·Most cited

BioBrain: A Multi-Agent Framework for Natural Language Driven Quantitative Microscopy Data Analysis

Konstantinos Tsolakidis, Artù Breuer, Steen W.B. Bender, Stavroula Margaritaki, Marcus Winther Dreisler, Athanasios Oikonomou, Nikos S. Hatzakis

BioBrain translates natural language into reproducible microscopy analysis pipelines, outperforming language models in accuracy while enabling non-experts to analyze complex imaging data.

bioRxiv · Jun 21, 2026 · PreprintBiophysics

Rapid and reliable quantification of cytosolic mRNA escape (RNASCAPE)

Frank Schulz, Emily Winther Sørensen, Steen W.B. Bender, Artù Breuer, Georgios Kyriakakis, Jacob Kæstel‐Hansen, Georgios Bolis, Athanasios Oikonomou, Konstantinos Tsolakidis, Stefanos Arampatzis, Guangjun Nie, Nikos S. Hatzakis

RNASCAPE quantifies mRNA cytosolic escape using deep learning, achieving 78% accuracy with three timepoints and LNP parameters, revealing cholesterol's impact on mRNA release.

bioRxiv · Apr 11, 2026 · PreprintBiophysics