Author

L. A. F. Frantz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:differential expression· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Organism:human· 1 Assay:metabolomics· 1 Assay:metagenomics· 1

Frequent Co-Authors

G. Larson· 3 shared C. Warinner· 2 shared I. M. Velsko· 2 shared A. Carmagnini· 1 shared A. Harris· 1 shared A. Herbig· 1 shared C. Beeravolu Reddy· 1 shared C. M. Lewis· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersMicrobiology

G. Larson

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Imputation of ancient canid genomes reveals inbreeding history over the past 10,000 years

K. Bougiouri, S. G. Aninta, S. Charlton, A. Harris, A. Carmagnini, G. Piliciauskiene, T. R. Feuerborn, L. Scarsbrook, K. Tabadda, P. Blazevicius, H. G. Parker, S. Gopalakrishnan, G. Larson, E. A. Ostrander, E. K. Irving-Pease, , F. Racimo

This study imputes ancient dog and wolf genomes to analyze inbreeding history over 10,000 years, finding lower inbreeding in ancient populations and associations between low ROH regions and olfaction/immune genes.

bioRxiv · Mar 15, 2024Evolutionary Biology

Selection of appropriate metagenome taxonomic classifiers for ancient microbiome research

I. M. Velsko, L. A. F. Frantz, A. Herbig, G. Larson, C. Warinner

This study evaluates how ancient DNA damage affects taxonomic classification accuracy in metagenomic datasets using five classifiers, finding that program-specific biases outweigh damage effects.

bioRxiv · Feb 5, 2018Microbiology

The dental calculus metabolome in modern and historic samples

I. M. Velsko, K. A. Overmyer, C. Speller, M. Collins, L. Loe, L. A. F. Frantz, J. B. Rodriguez Martinez, E. Chavez, L. Klaus, K. Sankaranarayanan, C. M. Lewis, J. J. Coon, G. Larson, C. Warinner

This study characterizes the metabolome of modern and historic dental calculus to identify patterns of metabolite persistence and loss over time.

bioRxiv · May 9, 2017Microbiology

Blockwise Site Frequency Spectra for Inferring Complex Population Histories and Recombination

C. Beeravolu Reddy, M. J. Hickerson, L. A. F. Frantz, K. Lohse

ABLE infers population history and recombination using blockwise site frequency spectra from whole genomes, showing orangutans split 650-950 kya with recent secondary contact.

bioRxiv · Sep 28, 2016Evolutionary Biology