Author

Lixia Xin

Agency for Science, Technology and Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Hwee Meng Low· 2 shared Jonathan GökeiD· 2 shared Ying CheniD· 2 shared Alexander LezhavaiD· 1 shared Alexandre H. ThiéryiD· 1 shared Alicia OshlackiD· 1 shared Andre SimiD· 1 shared Chelsea SawyeriD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Hwee Meng Low

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2 papers

Recent·Most cited

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

Ying Chen, N. Davidson, Yuk Kei Wan, Fei Yao, Yan Su, Hasindu Gamaarachchi, Andre Sim, Harshil Patel, Hwee Meng Low, Christopher Hendra, Laura Wratten, Christopher Hakkaart, Chelsea Sawyer, Viktoriia Iakovleva, Puay Leng Lee, , Jonathan Göke

This study benchmarks Nanopore long read RNA sequencing in human cell lines, showing improved isoform resolution compared to short reads.

Nature Methods · Mar 13, 2025Peer-reviewedGenomics

AERON: Transcript quantification and gene-fusion detection using long reads

Mikko Rautiainen, Dilip A. Durai, Ying Chen, Lixia Xin, Hwee Meng Low, Jonathan Göke, Tobias Marschall, Marcel H. Schulz

AERON quantifies transcript expression and detects gene-fusions from long RNA reads, showing accuracy on simulated and real data.

bioRxiv · Jan 27, 2020 · PreprintBioinformatics