Author

M. A. Islam

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. N. F. Versypt· 1 shared C. L. Moe· 1 shared E. A. Edwards· 1 shared E. Vigrass· 1 shared G. Joseph· 1 shared J. Green· 1 shared L. A. Puentes Jacome· 1 shared L. Unicomb· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBioengineering

A. N. F. Versypt

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4 papers

Recent·Most cited

An agent-based modeling approach for lung fibrosis in response to COVID-19

M. A. Islam, M. Getz, P. Macklin, A. N. F. Versypt

This paper develops an agent-based model to simulate lung fibrosis progression after SARS-CoV-2 infection, showing how TGF-β source dynamics influence fibrosis outcomes.

bioRxiv · Oct 3, 2022Bioengineering

Designing novel biochemical pathways to commodity chemicals using ReactPRED and RetroPath2.0

E. Vigrass, M. A. Islam

The paper designs 49 novel biochemical pathways for producing benzene, phenol, and 1,2-propanediol using ReactPRED and RetroPath2.0, with a curated methodology leveraging biological databases.

bioRxiv · Dec 31, 2020 · PreprintBioengineering

Quantitative assessment of fecal contamination in multiple environmental sample types in urban communities in Dhaka, Bangladesh using SaniPath microbial approach

N. Amin, M. Rahman, S. Raj, S. Ali, J. Green, S. Das, S. Doza, M. H. Mondol, Y. Wang, M. A. Islam, M.-U. Alam, T. M. N. Huda, S. Haque, L. Unicomb, G. Joseph, C. L. Moe

The paper assesses fecal contamination in urban Dhaka using E. coli MPN measurements across different environmental samples and finds higher contamination in low-income areas compared to high-income and transient neighborhoods.

bioRxiv · Aug 2, 2019Microbiology

Sustained dechlorination of vinyl chloride to ethene in Dehalococcoides-enriched cultures grown without addition of exogenous vitamins and at low pH

L. A. Puentes Jacome, P.-H. Wang, O. Molenda, Y. X. Li, M. A. Islam, E. A. Edwards

This study shows that Dehalococcoides-enriched cultures can sustain TCE dechlorination to ethene at low pH without exogenous vitamins, but VcrA activity declines below pH 6.0.

bioRxiv · Apr 18, 2019Microbiology