Author

M. Alvarez-Estape

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Organism:non-human primate· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

T. Marques-Bonet· 3 shared D. Juan· 2 shared M. Kuhlwilm· 2 shared P. Esteller-Cucala· 2 shared S. Han· 2 shared A. M. Andres· 1 shared A. Rymbekova· 1 shared B. Ssebide· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersEvolutionary Biology

T. Marques-Bonet

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3 papers

Recent·Most cited

Ghost admixture in eastern gorillas

H. Pawar, A. Rymbekova, S. Cuadros, X. Huang, M. de Manuel, T. van der Valk, I. Lobon, M. Alvarez-Estape, M. Haber, O. Dolgova, S. Han, P. Esteller-Cucala, D. Juan, Q. Ayub, R. Bautista, , M. Kuhlwilm

The paper identifies archaic admixture in eastern gorillas using whole genome sequences and ABC with neural networks, finding introgression from a ghost lineage into their common ancestor.

bioRxiv · Dec 19, 2022 · PreprintEvolutionary Biology

Transcriptome innovations in primates revealed by single-molecule long-read sequencing

L. Ferrandez-Peral, X. Zhan, M. Alvarez-Estape, C. Chiva, P. Esteller-Cucala, R. Garcia-Perez, E. Julia, E. Lizano, O. Fornas, E. Sabido, Q. Li, T. Marques-Bonet, D. Juan, G. Zhang

The paper uses long-read sequencing to identify novel transcripts and isoform changes in primate transcriptomes, highlighting immune-related regulatory divergence.

bioRxiv · Nov 10, 2021 · PreprintEvolutionary Biology

HuConTest: Testing human contamination in great ape samples

M. Kuhlwilm, C. Fontsere, S. Han, M. Alvarez-Estape, T. Marques-Bonet

HuConTest detects human contamination in short read sequencing data from great apes using blood and tissue samples, showing its utility in complex samples with low endogenous DNA.

bioRxiv · Mar 30, 2021Evolutionary Biology