Author

M. F. Pedro

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:mouse· 3 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

K. B. Xavier· 3 shared B. H. Good· 2 shared F. B. Yu· 2 shared K. C. Huang· 2 shared K. S. Vasquez· 2 shared N. Neff· 2 shared S. K. Higginbottom· 2 shared A. Aranda-Diaz· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersMicrobiology

K. B. Xavier

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

High-resolution lineage tracking of within-host evolution and strain transmission in a human gut symbiont across ecological scales

K. S. Vasquez, D. P. G. H. Wong, M. F. Pedro, F. B. Yu, S. Jain, X. Meng, S. K. Higginbottom, B. C. DeFelice, N. Neff, A. S. Bhatt, C. Tropini, K. B. Xavier, J. L. Sonnenburg, B. H. Good, K. C. Huang

The paper tracks lineage evolution and transmission of Bacteroides thetaiotaomicron across hosts and ecological scales using genomic barcoding and whole-genome sequencing.

bioRxiv · Feb 17, 2024 · PreprintEvolutionary Biology

Gut protective Klebsiella species promotes microbiota recovery and pathobiont clearance while preventing inflammation

V. Cabral, R. A. Oliveira, M. B. Correia, M. F. Pedro, C. Ubeda, K. B. Xavier

This study shows that Klebsiella sp. ARO112 promotes microbiota recovery, clears pathobionts, and prevents inflammation in an IBD mouse model.

bioRxiv · Nov 14, 2023Microbiology

Quantifying the interplay between rapid bacterial evolution within the mouse intestine and transmission between hosts

K. S. Vasquez, L. Willis, N. Cira, K. M. Ng, M. F. Pedro, A. Aranda-Diaz, M. Rajendram, F. B. Yu, S. K. Higginbottom, N. Neff, G. Sherlock, K. B. Xavier, S. Quake, J. Sonnenburg, B. H. Good, K. C. Huang

The paper tracks bacterial evolution and transmission in mice using barcoded E. coli strains, showing rapid selection and migration effects on microbiota composition.

bioRxiv · Dec 4, 2020Microbiology