M. N. Hoque

Characterization of β-lactamase and virulence genes in Pseudomonas aeruginosa isolated from clinical, environmental and poultry sources in Bangladesh

This study characterizes β-lactamase and virulence genes in Pseudomonas aeruginosa isolates from clinical, environmental, and poultry sources in Bangladesh, revealing high multidrug resistance and specific gene prevalence.

Genomic diversity and molecular epidemiology of a multidrug resistant Pseudomonas aeruginosa DMC30b isolated from hospitalized burn patient in Bangladesh

This paper reports the complete genome sequence of a multidrug-resistant Pseudomonas aeruginosa strain isolated from a burn patient in Bangladesh, revealing its genetic diversity, molecular epidemiology, and resistance mechanisms.

Metagenomic analysis reveals the abundance and diversity of opportunistic fungal pathogens in the nasopharyngeal tract of COVID-19 patients

This study uses metagenomic analysis to show that SARS-CoV-2 infection increases opportunistic fungal pathogens in the nasopharyngeal tract while reducing commensal fungi.

Insights into the nutritional properties and microbiome diversity in sweet and sour yogurt manufactured in Bangladesh

This study evaluates the nutritional properties and microbiome diversity of sweet and sour yogurt from Bangladesh using 16S and 18S rRNA sequencing.

Microbiome dysbiosis regulates the level of energy production under anaerobic condition

This study examines microbiome dysbiosis in anaerobic digesters, finding that specific bacterial and archaeal strains correlate with higher energy production.

Genome-wide Genetic Marker Analysis and Genotyping of Escherichia fergusonii strain OTSVEF-60

This study reports the complete genome analysis of Escherichia fergusonii strain OTSVEF-60, identifying antibiotic resistance genes, virulence genes, and mobile genetic elements associated with its pathogenicity and antimicrobial resistance.

Microbiome Dynamics of Bovine Mastitis Progression and Genomic Determinants

This study profiles microbiome dynamics across mastitis states in cows, identifying virulence factors, antibiotic resistance genes, and functional correlations to inform diagnostics and therapeutics.

Evolutionary dynamics of SARS-CoV-2 nucleocapsid protein (N protein) and its consequences

This study analyzes mutations in the SARS-CoV-2 N protein across 61,485 sequences, identifying 1034 nucleotide mutations and 684 amino acid substitutions, and their potential impact on diagnostic primers and protein structure.

Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2 etiologic agent of global pandemic COVID-19: an in silico approach

This study designs a chimeric peptide vaccine against SARS-CoV-2 S, M, and E proteins using in silico methods, showing high population coverage and predicted immune responses.

Multidrug-Resistant Avian Pathogenic Escherichia coli Strains and Association of Their Virulence Genes in Bangladesh

This study identifies prevalent APEC phylotypes and their virulence and resistance genes in Bangladesh poultry farms, highlighting associations between specific phylotypes and pathogenicity.

Comprehensive annotations of the mutational spectra of SARS-CoV-2 spike protein: a fast and accurate pipeline

The paper develops a fast and accurate pipeline to identify nonsynonymous mutations and deletions in SARS-CoV-2 spike protein sequences from large datasets.

Resistome diversity in bovine clinical mastitis microbiome, a signature concurrence

This study identifies resistome diversity in bovine clinical mastitis microbiomes and links it to microbiome composition and antibiotic resistance.