Author

Manying Xia

Shanghai Jiao Tong University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Qing LüiD· 2 shared Dan MengiD· 1 shared Dylan J. TayloriD· 1 shared Evan E. EichleriD· 1 shared Glennis A. LogsdoniD· 1 shared Guang HeiD· 1 shared Junfeng ShiiD· 1 shared Liangjie Liu· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Qing LüORCID

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2 papers

Recent·Most cited

Decoding Missense Variants by Incorporating Phase Separation via Machine Learning

Mofan Feng, Xiaoxi Wei, Xi Zheng, Liangjie Liu, Lin Lin, Manying Xia, Guang He, Yi Y. Shi, Qing Lü

PSMutPred predicts the impact of missense variants on phase separation using machine learning, improving the interpretation of variants of unknown significance in intrinsically disordered regions.

Nature Communications · Sep 27, 2024Peer-reviewedBioinformatics

A refined characterization of large-scale genomic differences in the first complete human genome

Xiangyu Yang, Xuankai Wang, Yawen Zou, Shilong Zhang, Manying Xia, Mitchell Robert Vollger, Nae-Chyun Chen, Dylan J. Taylor, William T. Harvey, Glennis A. Logsdon, Dan Meng, Junfeng Shi, Rajiv C. McCoy, Michael C. Schatz, Weidong Li, , Yafei Mao

The paper identifies and categorizes large-scale genomic differences between the T2T-CHM13 and GRCh38 human genome assemblies, highlighting their implications for disease and evolution.

bioRxiv · Dec 17, 2022 · PreprintGenomics