Author

Marina Alexandre Gaveta

Ludwig Cancer Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:human· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Krisztián HomicskóiD· 3 shared Raphaël GottardoiD· 3 shared Daria BusztaiD· 2 shared Jonathan BaciD· 2 shared Senbai KangiD· 2 shared Solange PetersiD· 2 shared Stephanie Tissot· 2 shared Sylvie André· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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3 shared papersCancer Biology

Krisztián HomicskóORCID

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3 papers

Recent·Most cited

Cancer BiologyNature MethodsPeer-reviewedApr 30, 2026

From Transcripts to Cells: Dissecting Sensitivity, Signal Contamination, and Specificity in Xenium Spatial Transcriptomics

Mariia Bilous, Daria Buszta, Jonathan Bac…·Raphaël Gottardo

The paper evaluates Xenium spatial transcriptomics performance, identifies technical limitations, and introduces SPLIT to improve signal purity and cell-type resolution.

15 citationstop 1%

mousespatial transcriptomics

Cancer BiologybioRxivPreprintFeb 13, 2026

Deciphering spatial heterogeneity of patient-derived organoids of colorectal tumors for drug discovery

Maxim N. Norkin, Jonathan Bac, Louis McConnell…·Krisztián Homicskó

This study develops a platform to analyze spatial heterogeneity in colorectal tumor organoids using spatial transcriptomics and validates it against single-cell and tumor spatial data.

DOI 10.64898/2026.02.10.704651

humanspatial transcriptomics

BioinformaticsbioRxivPreprintNov 1, 2024

Transcriptome Analysis of Archived Tumor Tissues by Visium, GeoMx DSP, and Chromium Methods Reveals Inter- and Intra-Patient Heterogeneity

Yixing Dong, Chiara Saglietti, Quentin Bayard…·Elo Madissoon

The paper compares three transcriptomic methods on FFPE tumor samples to assess their ability to detect inter- and intra-patient heterogeneity.

4 citations

humanbulk RNA-seq