Author

Stephen Mac

Arima Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:multiple species· 1

Frequent Co-Authors

Alan F. ScottiD· 1 shared Andrew J. CrawfordiD· 1 shared Andrew W. CarrolliD· 1 shared Anne Kraus· 1 shared Anthony D. SchmittiD· 1 shared Anthony Schmitt· 1 shared Arkarachai FungtammasaniD· 1 shared Chen-Shan ChiniD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Alan F. ScottORCID

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Author profile →

2 papers

Recent·Most cited

Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing

Hollis A. Dahn, Jacquelyn Mountcastle, Jennifer Balacco, Sylke Winkler, Iliana Bista, Anthony D. Schmitt, Olga Vinnere Pettersson, Giulio Formenti, Karen Oliver, Michelle Smith, Wenhua Tan, Anne Kraus, Stephen Mac, Lisa M. Komoroske, Tanya M. Lama, , Olivier D. Fedrigo

The paper benchmarks DNA preservation methods for long-read and long-range sequencing across vertebrates, finding that optimal methods vary by taxa, tissue, and application.

GigaScience · Jan 1, 2022Peer-reviewedGenomics

Accurate chromosome-scale haplotype-resolved assembly of human genomes

Shilpa Garg, Arkarachai Fungtammasan, Andrew W. Carroll, Mike Chou, Anthony Schmitt, Xiang Zhou, Stephen Mac, Paul Peluso, Emily Hatas, Jay Ghurye, Jared Maguire, Medhat Mahmoud, Haoyu Cheng, David Heller, Justin M. Zook, , Heng Li

This paper introduces a method for chromosome-scale haplotype-resolved genome assembly using long reads and long-range data, achieving high accuracy and contiguity in three human genomes.

bioRxiv · Jul 1, 2020 · PreprintBioinformatics