Author

Michael C Schatz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Approach:benchmark study· 1 Approach:deep learning· 1 Research Focus:genome assembly· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Alejandro Hernandez Wences· 1 shared Arndt von HaeseleriD· 1 shared Doreen WareiD· 1 shared Elena Ghiban· 1 shared Eric Antonio· 1 shared Eric Biggers· 1 shared Fritz J Sedlazeck· 1 shared Gholson J Lyon· 1 shared

Activity by Year

2014-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperGenomics

Alejandro Hernandez Wences

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4 papers

Recent·Most cited

Assemblytics: a web analytics tool for the detection of assembly-based variants

Maria Nattestad, Michael C Schatz

Assemblytics detects and analyzes structural variants by comparing de novo assemblies to a reference genome, identifying six variant classes and providing interactive visualizations.

bioRxiv · Mar 20, 2016Genomics

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

Moritz Smolka, Philipp Rescheneder, Michael C Schatz, Arndt von Haeseler, Fritz J Sedlazeck

Teaser benchmarks and optimizes read mapping parameters for NGS data, showing how Bowtie2 can be tailored for different datasets.

bioRxiv · Sep 1, 2015Bioinformatics

Accurate detection of de novo and transmitted INDELs within exome-capture data using micro-assembly

Giuseppe Narzisi, Jason A O'Rawe, Ivan Iossifov, Han Fang, Yoon-ha Lee, Zihua Wang, Yiyang Wu, Gholson J Lyon, Michael Wigler, Michael C Schatz

Scalpel detects de novo and transmitted INDELs in exome data with high specificity and sensitivity, outperforming existing tools in challenging repeat regions and identifying new autism-related genes.

Nature Methods · Aug 17, 2014Peer-reviewedBioinformatics

New whole genome de novo assemblies of three divergent strains of rice (O. sativa) documents novel gene space of aus and indica

Michael C Schatz, Lyza G Maron, Joshua C Stein, Alejandro Hernandez Wences, James Gurtowski, Eric Biggers, Hayan Lee, Melissa Kramer, Eric Antonio, Elena Ghiban, Mark H Wright, Jer-ming Chia, Doreen Ware, Susan R McCouch, William Richard McCombie

The paper presents de novo genome assemblies of three rice strains, revealing novel gene spaces and structural variations not captured by reference-based resequencing.

bioRxiv · Apr 2, 2014Genomics