Author

Jer-ming Chia

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Doreen WareiD· 2 shared James Gurtowski· 2 shared Aaron A. BestiD· 1 shared Adam P. ArkiniD· 1 shared Alejandro Hernandez Wences· 1 shared Annette GreineriD· 1 shared Ben P. Bowen· 1 shared Benjamin H. AlleniD· 1 shared

Activity by Year

2014-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Doreen WareORCID

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Author profile →

2 papers

Recent·Most cited

The DOE Systems Biology Knowledgebase (KBase)

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, Nomi L. Harris, Rick L. Stevens, Sergei Maslov, Paramvir Dehal, Doreen Ware, Fernando Pérez, Richard Shane Canon, Michael W. Sneddon, Matthew L Henderson, William J. Riehl, Dan Murphy-Olson, Stephen Y. Chan, , Dantong Yu

Open-source KBase platform unites reference genomes and biochemistry, over 70 apps, Jupyter-based Narratives with provenance, and a Docker SDK for reproducible plant and microbial systems biology.

Nature Biotechnology · Jul 1, 2018Peer-reviewedBioinformatics✦ In-depth digest

New whole genome de novo assemblies of three divergent strains of rice (O. sativa) documents novel gene space of aus and indica

Michael C Schatz, Lyza G Maron, Joshua C Stein, Alejandro Hernandez Wences, James Gurtowski, Eric Biggers, Hayan Lee, Melissa Kramer, Eric Antonio, Elena Ghiban, Mark H Wright, Jer-ming Chia, Doreen Ware, Susan R McCouch, William Richard McCombie

The paper presents de novo genome assemblies of three rice strains, revealing novel gene spaces and structural variations not captured by reference-based resequencing.

bioRxiv · Apr 2, 2014Genomics