Author

Mingzhi Ye

BGI Group (China)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Cheng LuoiD· 1 shared Chenglin Jiang· 1 shared David A. BrauniD· 1 shared Ethan C BurnsiD· 1 shared Giacomo OliveiraiD· 1 shared Jianbing YaniD· 1 shared Jill F. LundelliD· 1 shared Kelly StreetiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Cheng LuoORCID

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2 papers

Recent·Most cited

VDJdive and ECLIPSE enhance single-cell TCR sequencing analysis through the probabilistic resolution of ambiguous clonotypes

Ethan C Burns, Mercedeh Javanbakht Movassagh, Jill F. Lundell, Mingzhi Ye, Zhaochen Ye, Giacomo Oliveira, Rishabh Rout, Miya B. Hugaboom, Kelly Street, David A. Braun

VDJdive and ECLIPSE resolve ambiguous clonotypes in scTCR-seq by improving chain pairing and clone size estimation, enhancing clonal tracking across conditions.

bioRxiv · Feb 20, 2026 · PreprintImmunology

gcaPDA: A Haplotype-resolved Diploid Assembler

Min Xie, Linfeng Yang, Chenglin Jiang, Shenshen Wu, Cheng Luo, Xin Yang, Lijuan He, Shixuan Chen, Tianquan Deng, Mingzhi Ye, Jianbing Yan, Ning Yang

The paper introduces gcaPDA, a diploid assembler that uses haploid gamete cells to resolve haplotypes, and demonstrates its effectiveness on a complex maize genome.

BMC Bioinformatics · Feb 14, 2022Peer-reviewedGenomics