Mapping Tumor-Microenvironment dependencies with TMEformer: A spatial foundation framework enabling in silico perturbation
Shensuo Li, Panting Liu, Qiheng Chen, Zichao Zhang, Yingkui Tang, Dian Liu, G Xu, Mingzhu Zhou, Jinqin Luo, Lan Huang, Bogong Chen, Siyang Ou, J‐Z Jiang, Xiyi Wei, L Yang, , Sujun Chen
TMEformer is a spatial deep learning framework that models tumor microenvironment dependencies and enables virtual perturbation analysis using spatial transcriptomics data.
bioRxiv · Jul 17, 2026 · PreprintBioinformatics