Author

Mohamad Alayouni

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Assay:proteomics· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1

Frequent Co-Authors

Adam M. DeutschbaueriD· 3 shared Adam P. ArkiniD· 3 shared Alexey Kazakov· 3 shared Denish PiyaiD· 3 shared Hemaa SelvakumariD· 3 shared Isabella MurrayiD· 3 shared Madeline SvabiD· 3 shared Sarshad Koderi ValappiliD· 3 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

Adam M. DeutschbauerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Genome-wide characterization of host factors involved in single-stranded RNA and DNA phage infection pathways

Isabella Murray, Roniya Thapa Magar, Denish Piya, Hemaa Selvakumar, Lucas Morinière, Sarshad Koderi Valappil, Madeline Svab, Jirapat Thongchol, Alexey Kazakov, Nathalie H. Elisabeth, Mohamad Alayouni, Prithvi Pal Singh, Artur Muszyński, Parastoo Azadi, Siân V. Owen, , Vivek K. Mutalik

This study identifies host factors critical for ssRNA and ssDNA phage infection in E. coli, revealing conserved dependencies and lineage-specific requirements.

bioRxiv · Sep 22, 2026 · PreprintMicrobiology

A comprehensive phage-bacteria interaction atlas links phage lineage and capsule serotype to genome-guided machine learning prediction in Klebsiella pneumoniae

Hemaa Selvakumar, Avery J. C. Noonan, Ella R. Rotman, Mohamad Alayouni, Denish Piya, Flavien Maucourt, Sarshad Koderi Valappil, Madeline Svab, Britney Orihuela, Gina Cowser, Isabella Murray, Collis Bousliman, Alexey Kazakov, Adam M. Deutschbauer, Simon Roux, , Vivek K. Mutalik

This paper constructs a phage-bacteria interaction atlas for Klebsiella pneumoniae and develops a genome-guided machine learning model to predict phage-host interactions, outperforming traditional methods.

bioRxiv · Aug 17, 2026 · PreprintMicrobiology

Comprehensive interaction profiling and machine learning prediction of bacteriophage infectivity across clinically diverse Pseudomonas aeruginosa

Denish Piya, Avery J. C. Noonan, Hemaa Selvakumar, Mohamad Alayouni, Sarshad Koderi Valappil, Flavien Maucourt, Isabella Murray, Madeline Svab, Collis Bousliman, Matthew Heidenblut, Britney Orihuela, Alexey Kazakov, Hans K. Carlson, Yiyan Yao, Emerson Smith, , Vivek K. Mutalik

The paper develops a genome-based framework to predict bacteriophage infectivity against diverse Pseudomonas aeruginosa strains using machine learning and experimental data.

bioRxiv · May 20, 2026 · PreprintMicrobiology