Author

Neil C Chi

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Elie N. FarahiD· 2 shared Agnieszka D’Antonio‐ChronowskaiD· 1 shared Allen WangiD· 1 shared Andrew P. BlairiD· 1 shared Anita Lie· 1 shared Benoit G. BruneauiD· 1 shared Bing ReniD· 1 shared Bing YangiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetic & Genomic Medicine

Elie N. FarahORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Single cell multiomics reveals drivers of metabolic dysfunction-associated steatohepatitis

Weston S. Elison, Lei Chang, Yang Xie, Charlene Miciano, Qian Yang, Hannah M Mummey, Ryan Lancione, Sierra Corban, Sadatsugu Sakane, Jacinta D. Lucero, Sainath Mamde, Hyun Sik Kim, Matthew J Kim, Rebecca L. Melton, Luca Tucciarone, , Kyle J. Gaulton

This study uses single-cell multi-omics to identify cell type-specific regulatory networks and novel therapeutic targets in MASLD.

medRxiv · May 9, 2025 · PreprintGenetic & Genomic Medicine

Cell Layers: Uncovering clustering structure and knowledge in unsupervised single-cell transcriptomic analysis

Andrew P. Blair, Robert Hu, Elie N. Farah, Neil C Chi, Katherine S. Pollard, Pawel F. Przytycki, Irfan S. Kathiriya, Benoit G. Bruneau

Cell Layers provides an interactive tool to explore single-cell clustering across resolutions, linking molecular data with cluster evaluation metrics.

Bioinformatics Advances · Jan 1, 2022Peer-reviewedBioinformatics