PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity
C. Wymant, M. Hall, O. Ratmann, D. Bonsall, T. Golubchik, M. de Cesare, A. Gall, M. Cornelissen, C. Fraser, STOP-HCV Consortium, The Maela Pneumococcal Collaboration, The BEEHIVE Collaboration
PHYLOSCANNER infers transmission direction and identifies multiply infected individuals from pathogen genetic diversity across hosts using sequence data.
bioRxiv · Nov 17, 2017Evolutionary Biology