Author

M. de Cesare

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:deep learning· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

D. Bonsall· 2 shared I. Elliott· 2 shared R. Bowden· 2 shared T. Golubchik· 2 shared A. Brown· 1 shared A. Gall· 1 shared A. J. Pollard· 1 shared A. Trebes· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMicrobiology

D. Bonsall

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Author profile →

3 papers

Recent·Most cited

Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans

I. Elliott, N. Thangnimitchok, M. de Cesare, P. Linsuwanon, D. H. Paris, N. P. J. Day, P. N. Newton, R. Bowden, E. M. Batty

The paper develops a targeted sequencing method to study Orientia tsutsugamushi genomes in chiggers and humans, revealing phylogeographic clustering patterns.

bioRxiv · Jan 7, 2021Microbiology

Targeted metagenomic sequencing enhances the identification of pathogens associated with acute infection.

C. Goh, T. Golubchik, M. A. Ansari, M. de Cesare, A. Trebes, I. Elliott, D. Bonsall, P. Piazza, A. Brown, H. Slawinski, N. Martin, S. Defres, M. J. Griffiths, J. E. Bray, M. C. Maiden, , R. Bowden

Castanet, a targeted metagenomic sequencing method, improves pathogen detection in clinical samples by combining sensitivity with cost-effectiveness and broad organism coverage.

bioRxiv · Jul 28, 2019 · PreprintMicrobiology

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

C. Wymant, M. Hall, O. Ratmann, D. Bonsall, T. Golubchik, M. de Cesare, A. Gall, M. Cornelissen, C. Fraser, STOP-HCV Consortium, The Maela Pneumococcal Collaboration, The BEEHIVE Collaboration

PHYLOSCANNER infers transmission direction and identifies multiply infected individuals from pathogen genetic diversity across hosts using sequence data.

bioRxiv · Nov 17, 2017Evolutionary Biology