Author

P. Carini

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 6

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

C. Dupont· 2 shared A. Crits-Christoph· 1 shared A. E. Santoro· 1 shared A. Vuillemin· 1 shared B. J. Shapiro· 1 shared B. Khalili· 1 shared C. R. Guerrero· 1 shared C. Vanderburgh· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 6 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

C. Dupont

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Predicting microbial growth conditions from amino acid composition

T. P. Barnum, A. Crits-Christoph, M. Molla, P. Carini, H. H. Lee, N. Ostrov

This paper develops genome-based models to predict microbial growth conditions using amino acid composition, showing high accuracy for oxygen tolerance, temperature, salinity, and pH.

bioRxiv · Mar 22, 2024 · PreprintMicrobiology

Cultivating efficiency: High-throughput growth analysis of anaerobic bacteria in compact microplate readers.

O. L. O. Snoeyenbos-West, C. R. Guerrero, M. Valencia, P. Carini

This paper demonstrates the use of a small-footprint microplate reader for high-throughput growth analysis of anaerobic bacteria, showing comparable performance to a leading microplate reader and enabling dose-response studies of toxins.

bioRxiv · Oct 10, 2023Microbiology

Genome evolution in bacteria isolated from million-year-old subseafloor sediments

W. D. Orsi, T. Magritsch, S. Vargas, O. K. Coskun, A. Vuillemin, S. Hohna, G. Worheide, S. D'Hondt, B. J. Shapiro, P. Carini

This study examines genome evolution in Thalassospira bacteria from million-year-old subseafloor sediments, finding reduced recombination, increased pseudogenes, and genetic drift as dominant evolutionary forces.

bioRxiv · Dec 19, 2020Microbiology

Unraveling the effects of spatial variability and relic DNA on the temporal dynamics of soil microbial communities

P. Carini, M. Delgado-Baquerizo, E.-L. Hinckley, H. Holland-Moritz, T. E. Brewer, G. Rue, C. Vanderburgh, D. McKnight, N. Fierer

This study investigates how spatial variability and relic DNA affect temporal dynamics in soil microbial communities, finding that spatial patterns persist and relic DNA masks temporal changes.

mBio · Feb 25, 2020Peer-reviewedMicrobiology

The influence of substrate concentration on the culturability of heterotrophic soil microbes isolated by high-throughput dilution-to-extinction cultivation

R. Bartelme, J. M. Custer, C. Dupont, J. L. Espinoza, M. Torralba, B. Khalili, P. Carini

This study isolates subsurface soil microbes using high-throughput dilution-to-extinction culturing and shows that substrate concentration affects culturability of specific microbial lineages.

bioRxiv · Dec 2, 2019Microbiology

Patterns of thaumarchaeal gene expression in culture and diverse marine environments

P. Carini, C. Dupont, A. E. Santoro

The paper investigates thaumarchaeal gene expression under ammonia limitation and across environments, identifying core genes involved in ammonia oxidation.

bioRxiv · Mar 19, 2018Microbiology