Author

P. F. Stadler

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Cell Biology· 2 Ecology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 6 Research Focus:chromatin & epigenetic regulation· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1

Frequent Co-Authors

A. Brusa· 1 shared A. Contreras-Garrido· 1 shared A. Freudiger· 1 shared A. Garten· 1 shared A. Koerner· 1 shared A. Nitsche· 1 shared A. Nunn· 1 shared A. Ruiz-Lambides· 1 shared

Activity by Year

2017-2025 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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1 shared paperPlant Biology

A. Brusa

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Author profile →

7 papers

Recent·Most cited

Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques

A. Freudiger, V. M. Jovanovic, Y. Huang, N. Snyder-Mackler, D. F. Conrad, B. Miller, M. J. Montague, H. Westphal, P. F. Stadler, S. Bley, J. E. Horvath, L. J. N. Brent, M. L. Platt, A. Ruiz-Lambides, J. Tung, , A. Widdig

The paper estimates realized relatedness in free-ranging macaques using IBD analysis from low coverage whole genome data, revealing genetic variation within kin classes and cryptic relatives.

Proceedings of the National Academy of Sciences · Jan 14, 2025Peer-reviewedEcology

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

A. Nunn, I. Rodriguez-Arevalo, Z. Tandukar, K. Frels, A. Contreras-Garrido, P. Carbonell-Bejerano, P. Zhang, D. Ramos-Cruz, K. Jandrasits, C. Lanz, A. Brusa, M. Mirouze, K. Dorn, B. Jarvis, J. Sedbrook, , R. Chopra

The paper presents a chromosome-level genome assembly of Thlaspi arvense and uses it to analyze genetic variation and gene structure differences between accessions.

bioRxiv · Jul 30, 2021Plant Biology

Evolution of DNA methylation across Ecdysozoa

J. Engelhardt, O. Scheer, P. F. Stadler, S. J. Prohaska

The paper investigates DNA methylation evolution in Ecdysozoa, identifying multiple independent losses and predicting new instances of DNA methylation in previously unexamined phyla.

bioRxiv · Jul 15, 2021Evolutionary Biology

Pulse-Width Modulation of Gene Expression in Budding Yeast

R. Machne, D. B. Murray, S. H. Bernhart, I. M. Axmann, P. F. Stadler

The paper analyzes transcriptome oscillations in budding yeast to show how pulse-width modulation of transcription links growth rate and ribosome content.

bioRxiv · May 26, 2021 · PreprintCell Biology

PTEN regulates adipocyte progenitor growth, differentiation and replicative aging

A. S. Kirstein, S. Kehr, M. Nebe, M. Hanschkow, J. Lorenz, M. Penke, J. Breitfeld, D. Le Duc, K. Landgraf, A. Koerner, P. Kovacs, P. F. Stadler, W. Kiess, A. Garten

This study shows PTEN regulates adipocyte progenitor growth, differentiation, and aging by modulating FOXO1 and SREBP1 pathways, contributing to lipoma development in PHTS.

bioRxiv · Jan 5, 2021 · PreprintCell Biology

Time-Consistent Reconciliation Maps and ForbiddenTime Travel

N. Nojgaard, M. Geiss, P. F. Stadler, D. Merkle, N. Wieseke, M. Hellmuth

The paper introduces a method to determine time-consistent reconciliations of gene trees with species trees, including an efficient algorithm and implementation.

bioRxiv · Oct 10, 2017Evolutionary Biology

Alzheimer related genes show accelerated evolution

A. Nitsche, K. Reiche, U. Ueberham, C. Arnold, J. Hackermueller, F. Horn, P. F. Stadler, T. Arendt

The paper shows Alzheimer's disease-associated genes evolve faster than the genome, suggesting recent adaptive evolution in the human brain may influence disease mechanisms.

bioRxiv · Mar 7, 2017Evolutionary Biology