Author

P. H. Degnan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

C. K. Vanderpool· 2 shared D. E. Campbell· 2 shared R. Whitaker· 2 shared Z. A. Costliow· 2 shared A. Hsiao· 1 shared A. N. Adams· 1 shared J. M. Ridlon· 1 shared J. R. Leigh· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

C. K. Vanderpool

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A Novel Family of RNA-Binding Proteins Regulate Polysaccharide Metabolism in Bacteroides thetaiotaomicron

A. N. Adams, M. S. Azam, Z. A. Costliow, X. Ma, P. H. Degnan, C. K. Vanderpool

This study identifies a novel family of RNA-binding proteins in Bacteroides thetaiotaomicron that regulate polysaccharide metabolism by controlling gene expression in response to dietary sugars.

Journal of Bacteriology · Oct 12, 2021Peer-reviewedMicrobiology

Interrogation of the integrated mobile genetic elements in gut-associated Bacteroidaceae with a consensus prediction approach

D. E. Campbell, J. R. Leigh, T. Kim, W. E. England, R. Whitaker, P. H. Degnan

The paper introduces VICSIN, a consensus method for predicting and clustering mobile genetic elements in gut-associated Bacteroidaceae, identifying novel MGEs and revealing gene sharing patterns.

bioRxiv · Sep 2, 2021 · PreprintMicrobiology

Infection with novel Bacteroides phage BV01 alters host transcriptome and bile acid metabolism in a common human gut microbe

D. E. Campbell, L. Ly, J. M. Ridlon, A. Hsiao, R. Whitaker, P. H. Degnan

This paper shows that infection with Bacteroides phage BV01 alters host transcriptome and bile acid metabolism in B. vulgatus, with effects dependent on tspO gene disruption.

Cell Reports · Sep 1, 2020Peer-reviewedMicrobiology

Thiamine pyrophosphate riboswitches in Bacteroides species regulate transcription or translation of thiamine transport and biosynthesis genes

Z. A. Costliow, P. H. Degnan, C. K. Vanderpool

The paper investigates thiamine regulation in Bacteroides species, finding species-specific transcriptional and translational control mechanisms mediated by TPP riboswitches.

bioRxiv · Dec 6, 2019 · PreprintMicrobiology