Author

P. H. Janssen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Organism:multiple species· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:statistical model· 1

Frequent Co-Authors

A. L. Jones· 2 shared A. P. Foote· 2 shared C. Meili· 2 shared J. C. McEwan· 2 shared M. R. Kirk· 2 shared M. S. Elshahed· 2 shared N. H. Youssef· 2 shared S. J. Rowe· 2 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

A. L. Jones

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Author profile →

4 papers

Recent·Most cited

Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores

C. Meili, M. A. Tag ElDein, A. L. Jones, C. D. Moon, C. Andrews, M. R. Kirk, P. H. Janssen, C. J. Yeoman, S. Grace, J.-L. C. Borgogna, A. P. Foote, Y. I. Nagy, M. T. Khashef, A. Yassin, M. S. Elshahed, N. H. Youssef

This study surveys AGF diversity in the rumen of wild and domesticated herbivores, finding high diversity but limited new genera, and identifies host phylogeny as a key factor shaping community structure.

bioRxiv · Aug 29, 2023Microbiology

Patterns and determinants of the global herbivorous mycobiome

C. Meili, A. L. Jones, A. X. Arreola, j. Habel, C. J. Pratt, R. A. Hanafy, Y. Wang, A. S. Yassin, M. A. TagElDein, C. Moon, P. H. Janssen, M. Shrestha, P. Rajbhandari, M. Nagler, J. M. Vinzelj, , M. S. Elshahed

The paper analyzes AGF diversity across 661 fecal samples from 34 herbivorous species, identifying 56 novel genera and showing that both stochastic and deterministic processes shape AGF communities, with hindgut fermenters having stronger host-specific associations.

bioRxiv · Nov 21, 2022Microbiology

Low-cost sample preservation methods for high-throughput processing of rumen microbiomes

J. C. C. Budel, M. K. Hess, T. P. Bilton, H. Henry, K. G. Dodds, P. H. Janssen, J. C. McEwan, S. J. Rowe

This paper evaluates low-cost preservation methods for rumen microbiomes, finding that two modified lysis buffers outperform the standard method in DNA quality and throughput.

bioRxiv · Feb 10, 2022Microbiology

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

M. Hess, S. J. Rowe, T. C. Van Stijn, H. M. Henry, S. M. Hickey, R. Brauning, A. F. McCulloch, A. S. Hess, M. R. Kirk, S. Kittelmann, G. R. Wood, P. H. Janssen, J. C. McEwan

This paper develops a low-cost, high-throughput metagenome profiling method using restriction enzyme reduced representation sequencing and evaluates its performance for rumen microbiome analysis.

PLOS ONE · Apr 3, 2020Peer-reviewedMicrobiology