Author

A. L. Jones

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Bioengineering· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Research Focus:ecology & biodiversity· 3 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Organism:multiple species· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Organism:chicken / avian· 1

Frequent Co-Authors

N. H. Youssef· 4 shared C. Meili· 3 shared A. P. Foote· 2 shared M. Elshahed· 2 shared M. S. Elshahed· 2 shared P. H. Janssen· 2 shared Y. I. Nagy· 2 shared Y. Wang· 2 shared

Activity by Year

2022-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersMicrobiology

N. H. Youssef

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Development of a robotic cluster for automated and scalable cell therapy manufacturing

A. Melocchi, B. Schmittlein, A. L. Jones, Y. Ainane, A. Rizvi, D. Chan, E. Dickey, K. Pool, K. Harsono, D. Szymkiewicz, U. Scarfogliero, V. Bhatia, A. Sivanantham, N. Kreciglowa, A. Hunter, , J. H. Esensten

This paper develops a robotic system to automate cell therapy manufacturing, demonstrating comparable results to manual methods in expanding human CD8+ T cells.

bioRxiv · Dec 21, 2023Bioengineering

Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores

C. Meili, M. A. Tag ElDein, A. L. Jones, C. D. Moon, C. Andrews, M. R. Kirk, P. H. Janssen, C. J. Yeoman, S. Grace, J.-L. C. Borgogna, A. P. Foote, Y. I. Nagy, M. T. Khashef, A. Yassin, M. S. Elshahed, N. H. Youssef

This study surveys AGF diversity in the rumen of wild and domesticated herbivores, finding high diversity but limited new genera, and identifies host phylogeny as a key factor shaping community structure.

bioRxiv · Aug 29, 2023Microbiology

Anaerobic fungi in the tortoise alimentary tract illuminate early stages of host-fungal symbiosis and Neocallimastigomycota evolution

C. Pratt, C. Meili, A. L. Jones, D. K. Jackson, E. E. England, Y. Wang, S. Hartson, J. Rogers, M. Elshahed, N. H. Youssef

This paper identifies novel anaerobic gut fungi in tortoises, revealing their ancient evolutionary origin and reduced metabolic capabilities compared to mammalian counterparts.

bioRxiv · Aug 25, 2023 · PreprintMicrobiology

Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity

A. L. Jones, J. Clayburn, E. Pribil, A. Foote, D. Montgomery, M. Elshahed, N. H. Youssef

This study tracks anaerobic fungal communities in dairy calves from birth to maturity, finding rapid colonization, shifts in diversity and structure, and maternal transmission.

bioRxiv · Mar 22, 2023Microbiology

Patterns and determinants of the global herbivorous mycobiome

C. Meili, A. L. Jones, A. X. Arreola, j. Habel, C. J. Pratt, R. A. Hanafy, Y. Wang, A. S. Yassin, M. A. TagElDein, C. Moon, P. H. Janssen, M. Shrestha, P. Rajbhandari, M. Nagler, J. M. Vinzelj, , M. S. Elshahed

The paper analyzes AGF diversity across 661 fecal samples from 34 herbivorous species, identifying 56 novel genera and showing that both stochastic and deterministic processes shape AGF communities, with hindgut fermenters having stronger host-specific associations.

bioRxiv · Nov 21, 2022Microbiology